Novel Technologies for Exploring the Uncultivated Microbial Majority

Friday, 13 February 2015: 1:00 PM-2:30 PM
Room LL20C (San Jose Convention Center)
The vast majority of bacterial, archaeal, and viral species on our planet are yet uncultivated, which has hampered our ability to study these elusive yet globally important organisms. They play critical but often uncharacterized roles in carbon and nutrient cycling in terrestrial and aquatic environments as well as in plant and animal growth and health. Traditional approaches of metagenomics and more recently single-cell genomics have provided invaluable insights into their coding potential, yet functional and phenotypic characterization are challenging in a cultivation-independent setting. As a result, much of the sequence data remain poorly annotated, and many hypothesized functions remain untested. This symposium will focus on experimental and analytic techniques that enable the genomic analysis of uncultivated environmental organisms; in particular, those that enhance genome recovery and functional annotation. Moreover, methods complementing the sequence data with additional information about the organisms, such as substrate uptake and metabolism, will be discussed.
Organizer:
Susannah Tringe, U.S. Department of Energy Joint Genome Institute
Co-Organizer:
Tanja Woyke, U.S. Department of Energy Joint Genome Institute
Discussant:
Susannah Tringe, U.S. Department of Energy Joint Genome Institute
Speakers:
Steven Hallam, University of British Columbia Department of Microbiology & Immunology
Single-Cell Genomics Reveals Co-Metabolic Innovations Within Uncultivated Marine Group A Bacteria
Jennifer Pett-Ridge, Lawrence Livermore National Laboratory
Nanosims Isotopic Imaging of C and N Assimilation in Complex Microbial Communities
Tanja Woyke, U.S. Department of Energy Joint Genome Institute
Novel Function-Driven Single Cell Genomics Approaches
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